%FILES%
usr/
usr/bin/
usr/bin/bowtie
usr/bin/bowtie-align-l
usr/bin/bowtie-align-s
usr/bin/bowtie-build
usr/bin/bowtie-build-l
usr/bin/bowtie-build-s
usr/bin/bowtie-inspect
usr/bin/bowtie-inspect-l
usr/bin/bowtie-inspect-s
usr/share/
usr/share/bowtie/
usr/share/bowtie/scripts/
usr/share/bowtie/scripts/best_verify.pl
usr/share/bowtie/scripts/bowtie-hbb.sh
usr/share/bowtie/scripts/bs_mapability.pl
usr/share/bowtie/scripts/build_test.sh
usr/share/bowtie/scripts/colorize_fasta.pl
usr/share/bowtie/scripts/colorize_fastq.pl
usr/share/bowtie/scripts/convert_quals.pl
usr/share/bowtie/scripts/fastq_to_tabbed.pl
usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
usr/share/bowtie/scripts/gen_occ_lookup.pl
usr/share/bowtie/scripts/gen_solqual_lookup.pl
usr/share/bowtie/scripts/infer_fraglen.pl
usr/share/bowtie/scripts/make_a_thaliana_tair.sh
usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
usr/share/bowtie/scripts/make_c_elegans.sh
usr/share/bowtie/scripts/make_canFam2.sh
usr/share/bowtie/scripts/make_d_melanogaster.sh
usr/share/bowtie/scripts/make_e_coli.sh
usr/share/bowtie/scripts/make_galGal3.sh
usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
usr/share/bowtie/scripts/make_hg18.sh
usr/share/bowtie/scripts/make_hg19.sh
usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
usr/share/bowtie/scripts/make_mm8.sh
usr/share/bowtie/scripts/make_mm9.sh
usr/share/bowtie/scripts/make_rn4.sh
usr/share/bowtie/scripts/make_s_cerevisiae.sh
usr/share/bowtie/scripts/mapability.pl
usr/share/bowtie/scripts/pe_verify.pl
usr/share/bowtie/scripts/reconcile_alignments.pl
usr/share/bowtie/scripts/reconcile_alignments_pe.pl
usr/share/bowtie/scripts/run-hbb.sh
usr/share/doc/
usr/share/doc/bowtie/
usr/share/doc/bowtie/AUTHORS
usr/share/doc/bowtie/MANUAL
usr/share/doc/bowtie/MANUAL.markdown
usr/share/doc/bowtie/NEWS
usr/share/doc/bowtie/TUTORIAL
