%FILES%
usr/
usr/bin/
usr/bin/vendor_perl/
usr/bin/vendor_perl/agat
usr/bin/vendor_perl/agat_convert_bed2gff.pl
usr/bin/vendor_perl/agat_convert_embl2gff.pl
usr/bin/vendor_perl/agat_convert_genscan2gff.pl
usr/bin/vendor_perl/agat_convert_mfannot2gff.pl
usr/bin/vendor_perl/agat_convert_minimap2_bam2gff.pl
usr/bin/vendor_perl/agat_convert_sp_gff2bed.pl
usr/bin/vendor_perl/agat_convert_sp_gff2gtf.pl
usr/bin/vendor_perl/agat_convert_sp_gff2tsv.pl
usr/bin/vendor_perl/agat_convert_sp_gff2zff.pl
usr/bin/vendor_perl/agat_convert_sp_gxf2gxf.pl
usr/bin/vendor_perl/agat_sp_add_attribute_shortest_exon_size.pl
usr/bin/vendor_perl/agat_sp_add_attribute_shortest_intron_size.pl
usr/bin/vendor_perl/agat_sp_add_intergenic_regions.pl
usr/bin/vendor_perl/agat_sp_add_introns.pl
usr/bin/vendor_perl/agat_sp_add_splice_sites.pl
usr/bin/vendor_perl/agat_sp_add_start_and_stop.pl
usr/bin/vendor_perl/agat_sp_alignment_output_style.pl
usr/bin/vendor_perl/agat_sp_clipN_seqExtremities_and_fixCoordinates.pl
usr/bin/vendor_perl/agat_sp_compare_two_BUSCOs.pl
usr/bin/vendor_perl/agat_sp_compare_two_annotations.pl
usr/bin/vendor_perl/agat_sp_complement_annotations.pl
usr/bin/vendor_perl/agat_sp_ensembl_output_style.pl
usr/bin/vendor_perl/agat_sp_extract_attributes.pl
usr/bin/vendor_perl/agat_sp_extract_sequences.pl
usr/bin/vendor_perl/agat_sp_filter_by_ORF_size.pl
usr/bin/vendor_perl/agat_sp_filter_by_locus_distance.pl
usr/bin/vendor_perl/agat_sp_filter_by_mrnaBlastValue.pl
usr/bin/vendor_perl/agat_sp_filter_feature_by_attribute_presence.pl
usr/bin/vendor_perl/agat_sp_filter_feature_by_attribute_value.pl
usr/bin/vendor_perl/agat_sp_filter_feature_from_keep_list.pl
usr/bin/vendor_perl/agat_sp_filter_feature_from_kill_list.pl
usr/bin/vendor_perl/agat_sp_filter_gene_by_intron_numbers.pl
usr/bin/vendor_perl/agat_sp_filter_gene_by_length.pl
usr/bin/vendor_perl/agat_sp_filter_incomplete_gene_coding_models.pl
usr/bin/vendor_perl/agat_sp_filter_record_by_coordinates.pl
usr/bin/vendor_perl/agat_sp_fix_cds_phases.pl
usr/bin/vendor_perl/agat_sp_fix_features_locations_duplicated.pl
usr/bin/vendor_perl/agat_sp_fix_fusion.pl
usr/bin/vendor_perl/agat_sp_fix_longest_ORF.pl
usr/bin/vendor_perl/agat_sp_fix_overlaping_genes.pl
usr/bin/vendor_perl/agat_sp_fix_small_exon_from_extremities.pl
usr/bin/vendor_perl/agat_sp_flag_premature_stop_codons.pl
usr/bin/vendor_perl/agat_sp_flag_short_introns.pl
usr/bin/vendor_perl/agat_sp_flag_short_introns_ebi.pl
usr/bin/vendor_perl/agat_sp_functional_statistics.pl
usr/bin/vendor_perl/agat_sp_keep_longest_isoform.pl
usr/bin/vendor_perl/agat_sp_kraken_assess_liftover.pl
usr/bin/vendor_perl/agat_sp_list_short_introns.pl
usr/bin/vendor_perl/agat_sp_load_function_from_protein_align.pl
usr/bin/vendor_perl/agat_sp_manage_IDs.pl
usr/bin/vendor_perl/agat_sp_manage_UTRs.pl
usr/bin/vendor_perl/agat_sp_manage_attributes.pl
usr/bin/vendor_perl/agat_sp_manage_functional_annotation.pl
usr/bin/vendor_perl/agat_sp_manage_introns.pl
usr/bin/vendor_perl/agat_sp_merge_annotations.pl
usr/bin/vendor_perl/agat_sp_move_attributes_within_records.pl
usr/bin/vendor_perl/agat_sp_prokka_fix_fragmented_gene_annotations.pl
usr/bin/vendor_perl/agat_sp_prokka_infer_name_from_attributes.pl
usr/bin/vendor_perl/agat_sp_sensitivity_specificity.pl
usr/bin/vendor_perl/agat_sp_separate_by_record_type.pl
usr/bin/vendor_perl/agat_sp_statistics.pl
usr/bin/vendor_perl/agat_sp_webApollo_compliant.pl
usr/bin/vendor_perl/agat_sq_add_attributes_from_tsv.pl
usr/bin/vendor_perl/agat_sq_add_hash_tag.pl
usr/bin/vendor_perl/agat_sq_add_locus_tag.pl
usr/bin/vendor_perl/agat_sq_count_attributes.pl
usr/bin/vendor_perl/agat_sq_filter_feature_from_fasta.pl
usr/bin/vendor_perl/agat_sq_list_attributes.pl
usr/bin/vendor_perl/agat_sq_manage_IDs.pl
usr/bin/vendor_perl/agat_sq_manage_attributes.pl
usr/bin/vendor_perl/agat_sq_mask.pl
usr/bin/vendor_perl/agat_sq_remove_redundant_entries.pl
usr/bin/vendor_perl/agat_sq_rename_seqid.pl
usr/bin/vendor_perl/agat_sq_repeats_analyzer.pl
usr/bin/vendor_perl/agat_sq_reverse_complement.pl
usr/bin/vendor_perl/agat_sq_rfam_analyzer.pl
usr/bin/vendor_perl/agat_sq_split.pl
usr/bin/vendor_perl/agat_sq_stat_basic.pl
usr/share/
usr/share/man/
usr/share/man/man1/
usr/share/man/man1/agat_convert_bed2gff.pl.1p.gz
usr/share/man/man1/agat_convert_embl2gff.pl.1p.gz
usr/share/man/man1/agat_convert_genscan2gff.pl.1p.gz
usr/share/man/man1/agat_convert_mfannot2gff.pl.1p.gz
usr/share/man/man1/agat_convert_minimap2_bam2gff.pl.1p.gz
usr/share/man/man1/agat_convert_sp_gff2bed.pl.1p.gz
usr/share/man/man1/agat_convert_sp_gff2gtf.pl.1p.gz
usr/share/man/man1/agat_convert_sp_gff2tsv.pl.1p.gz
usr/share/man/man1/agat_convert_sp_gff2zff.pl.1p.gz
usr/share/man/man1/agat_convert_sp_gxf2gxf.pl.1p.gz
usr/share/man/man1/agat_sp_add_attribute_shortest_exon_size.pl.1p.gz
usr/share/man/man1/agat_sp_add_attribute_shortest_intron_size.pl.1p.gz
usr/share/man/man1/agat_sp_add_intergenic_regions.pl.1p.gz
usr/share/man/man1/agat_sp_add_introns.pl.1p.gz
usr/share/man/man1/agat_sp_add_splice_sites.pl.1p.gz
usr/share/man/man1/agat_sp_add_start_and_stop.pl.1p.gz
usr/share/man/man1/agat_sp_alignment_output_style.pl.1p.gz
usr/share/man/man1/agat_sp_clipN_seqExtremities_and_fixCoordinates.pl.1p.gz
usr/share/man/man1/agat_sp_compare_two_BUSCOs.pl.1p.gz
usr/share/man/man1/agat_sp_compare_two_annotations.pl.1p.gz
usr/share/man/man1/agat_sp_complement_annotations.pl.1p.gz
usr/share/man/man1/agat_sp_ensembl_output_style.pl.1p.gz
usr/share/man/man1/agat_sp_extract_attributes.pl.1p.gz
usr/share/man/man1/agat_sp_extract_sequences.pl.1p.gz
usr/share/man/man1/agat_sp_filter_by_ORF_size.pl.1p.gz
usr/share/man/man1/agat_sp_filter_by_locus_distance.pl.1p.gz
usr/share/man/man1/agat_sp_filter_by_mrnaBlastValue.pl.1p.gz
usr/share/man/man1/agat_sp_filter_feature_by_attribute_presence.pl.1p.gz
usr/share/man/man1/agat_sp_filter_feature_by_attribute_value.pl.1p.gz
usr/share/man/man1/agat_sp_filter_feature_from_keep_list.pl.1p.gz
usr/share/man/man1/agat_sp_filter_feature_from_kill_list.pl.1p.gz
usr/share/man/man1/agat_sp_filter_gene_by_intron_numbers.pl.1p.gz
usr/share/man/man1/agat_sp_filter_gene_by_length.pl.1p.gz
usr/share/man/man1/agat_sp_filter_incomplete_gene_coding_models.pl.1p.gz
usr/share/man/man1/agat_sp_filter_record_by_coordinates.pl.1p.gz
usr/share/man/man1/agat_sp_fix_cds_phases.pl.1p.gz
usr/share/man/man1/agat_sp_fix_features_locations_duplicated.pl.1p.gz
usr/share/man/man1/agat_sp_fix_fusion.pl.1p.gz
usr/share/man/man1/agat_sp_fix_longest_ORF.pl.1p.gz
usr/share/man/man1/agat_sp_fix_overlaping_genes.pl.1p.gz
usr/share/man/man1/agat_sp_fix_small_exon_from_extremities.pl.1p.gz
usr/share/man/man1/agat_sp_flag_premature_stop_codons.pl.1p.gz
usr/share/man/man1/agat_sp_flag_short_introns.pl.1p.gz
usr/share/man/man1/agat_sp_flag_short_introns_ebi.pl.1p.gz
usr/share/man/man1/agat_sp_functional_statistics.pl.1p.gz
usr/share/man/man1/agat_sp_keep_longest_isoform.pl.1p.gz
usr/share/man/man1/agat_sp_kraken_assess_liftover.pl.1p.gz
usr/share/man/man1/agat_sp_list_short_introns.pl.1p.gz
usr/share/man/man1/agat_sp_load_function_from_protein_align.pl.1p.gz
usr/share/man/man1/agat_sp_manage_IDs.pl.1p.gz
usr/share/man/man1/agat_sp_manage_UTRs.pl.1p.gz
usr/share/man/man1/agat_sp_manage_attributes.pl.1p.gz
usr/share/man/man1/agat_sp_manage_functional_annotation.pl.1p.gz
usr/share/man/man1/agat_sp_manage_introns.pl.1p.gz
usr/share/man/man1/agat_sp_merge_annotations.pl.1p.gz
usr/share/man/man1/agat_sp_move_attributes_within_records.pl.1p.gz
usr/share/man/man1/agat_sp_prokka_fix_fragmented_gene_annotations.pl.1p.gz
usr/share/man/man1/agat_sp_prokka_infer_name_from_attributes.pl.1p.gz
usr/share/man/man1/agat_sp_sensitivity_specificity.pl.1p.gz
usr/share/man/man1/agat_sp_separate_by_record_type.pl.1p.gz
usr/share/man/man1/agat_sp_statistics.pl.1p.gz
usr/share/man/man1/agat_sp_webApollo_compliant.pl.1p.gz
usr/share/man/man1/agat_sq_add_attributes_from_tsv.pl.1p.gz
usr/share/man/man1/agat_sq_add_hash_tag.pl.1p.gz
usr/share/man/man1/agat_sq_add_locus_tag.pl.1p.gz
usr/share/man/man1/agat_sq_count_attributes.pl.1p.gz
usr/share/man/man1/agat_sq_filter_feature_from_fasta.pl.1p.gz
usr/share/man/man1/agat_sq_list_attributes.pl.1p.gz
usr/share/man/man1/agat_sq_manage_IDs.pl.1p.gz
usr/share/man/man1/agat_sq_manage_attributes.pl.1p.gz
usr/share/man/man1/agat_sq_mask.pl.1p.gz
usr/share/man/man1/agat_sq_remove_redundant_entries.pl.1p.gz
usr/share/man/man1/agat_sq_rename_seqid.pl.1p.gz
usr/share/man/man1/agat_sq_repeats_analyzer.pl.1p.gz
usr/share/man/man1/agat_sq_reverse_complement.pl.1p.gz
usr/share/man/man1/agat_sq_rfam_analyzer.pl.1p.gz
usr/share/man/man1/agat_sq_split.pl.1p.gz
usr/share/man/man1/agat_sq_stat_basic.pl.1p.gz
usr/share/man/man3/
usr/share/man/man3/AGAT::AGAT.3pm.gz
usr/share/man/man3/AGAT::BioperlGFF.3pm.gz
usr/share/man/man3/AGAT::Config.3pm.gz
usr/share/man/man3/AGAT::Levels.3pm.gz
usr/share/man/man3/AGAT::OmniscientI.3pm.gz
usr/share/man/man3/AGAT::OmniscientO.3pm.gz
usr/share/man/man3/AGAT::OmniscientStat.3pm.gz
usr/share/man/man3/AGAT::OmniscientTool.3pm.gz
usr/share/man/man3/AGAT::PlotR.3pm.gz
usr/share/man/man3/AGAT::Utilities.3pm.gz
usr/share/perl5/
usr/share/perl5/vendor_perl/
usr/share/perl5/vendor_perl/AGAT/
usr/share/perl5/vendor_perl/AGAT/AGAT.pm
usr/share/perl5/vendor_perl/AGAT/AppEaser.pm
usr/share/perl5/vendor_perl/AGAT/BioperlGFF.pm
usr/share/perl5/vendor_perl/AGAT/Config.pm
usr/share/perl5/vendor_perl/AGAT/Levels.pm
usr/share/perl5/vendor_perl/AGAT/OmniscientI.pm
usr/share/perl5/vendor_perl/AGAT/OmniscientO.pm
usr/share/perl5/vendor_perl/AGAT/OmniscientStat.pm
usr/share/perl5/vendor_perl/AGAT/OmniscientToGTF.pm
usr/share/perl5/vendor_perl/AGAT/OmniscientTool.pm
usr/share/perl5/vendor_perl/AGAT/PlotR.pm
usr/share/perl5/vendor_perl/AGAT/SeqFeatureLite.pm
usr/share/perl5/vendor_perl/AGAT/Utilities.pm
usr/share/perl5/vendor_perl/auto/
usr/share/perl5/vendor_perl/auto/share/
usr/share/perl5/vendor_perl/auto/share/dist/
usr/share/perl5/vendor_perl/auto/share/dist/AGAT/
usr/share/perl5/vendor_perl/auto/share/dist/AGAT/agat_config.yaml
usr/share/perl5/vendor_perl/auto/share/dist/AGAT/feature_levels.yaml
usr/share/perl5/vendor_perl/auto/share/dist/AGAT/so.obo
